We present a method to control the resonant coupling interaction in a coupled-cavity photonic crystal molecule by using a local and reversible photochromic tuning technique. We demonstrate the ability to tune both a two-cavity and a three-cavity photonic crystal molecule through the resonance condition by selectively tuning the individual cavities. Using this technique, we can quantitatively determine important parameters of the coupled-cavity system such as the photon tunneling rate. This method can be scaled to photonic crystal molecules with larger numbers of cavities, which provides a versatile method for studying strong interactions in coupled resonator arrays. (C) 2013 AIP Publishing LLC